Bioinformatics Projects

Cyrus Shabahang

My classwork from BIMM143 at UC San Diego

Bioinformatics student at UC San Diego interested in genomics, transcriptomics, and computational biology. This portfolio showcases selected coursework and mini-projects focused on biological data analysis, visualization, and applied bioinformatics methods.

Technical Skills

Programming / Analysis: R, data visualization, statistical analysis, bioinformatics workflows
Tools / Topics: ggplot2, DESeq2, AlphaFold, AWS, RNA-seq, structural bioinformatics, genome informatics

Featured Areas

• Data visualization and exploratory analysis
• RNA-seq and differential expression analysis
• Structural bioinformatics and protein modeling
• Cloud-based biological data processing

Index of Material

Introductory classes

• Class 04 Intro to R (PDF)
• Class 05 Data Visualization with ggplot
• Class 06 RStudio Functions
• Class 07 Machine Learning

Applied bioinformatics projects

• Class 08 Breast Cancer Mini Project
• Class 09 Candy Mini Project
• Class 10 Structural Bioinformatics
• Class 11 Protein Structure Prediction with AlphaFold
• Class 12 Introduction to Genome Informatics Lab
• Class 13 RNA-seq with DESeq2
• Class 14 RNA-seq Mini Project
• Class 17 Obtaining and Processing SRA Datasets on AWS
• Class 18 Pertussis Mini Project